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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21793397_21829330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21793397 - 21829330
Intron Length:
35934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TAAGCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.5
36.7
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
29.1
-2.4
3.4
38.8
46.3
Minor BPS
54.8
0.23
1.7
69.51
42

Associated Gene:

Gene:
DISP1
Ensembl Gene ID:
ENSAPLG00000007189
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047105
21779171 - 21864484
85314
ENSAPLT00000038467
21790772 - 21864484
73713
ENSAPLT00000037964
21785500 - 21864484
78985