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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21812878_21829330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21812878 - 21829330
Intron Length:
16453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TAAGCTTTATTT
Flanking Amino Acid:
QKKTIELAGERNISYPSRTW
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
54.8
0.23
1.7
69.51
42

Associated Gene:

Gene:
DISP1
Ensembl Gene ID:
ENSAPLG00000007189
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018540
21775157 - 21864484
89328