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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21829868_21848135_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21829868 - 21848135
Intron Length:
18268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATTACT
Flanking Amino Acid:
QPVQQHIARIRPARPFKLPK
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.9
0.76
0.7
75.7
32.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
57.3
0.31
2.2
87.02
37.9

Associated Gene:

Gene:
DISP1
Ensembl Gene ID:
ENSAPLG00000007189
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037964
21785500 - 21864484
78985
ENSAPLT00000031393
21775185 - 21864484
89300
ENSAPLT00000048153
21793253 - 21864484
71232
ENSAPLT00000018540
21775157 - 21864484
89328
ENSAPLT00000047105
21779171 - 21864484
85314
ENSAPLT00000007463
21785500 - 21864484
78985
ENSAPLT00000038467
21790772 - 21864484
73713