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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21853375_21853725_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21853375 - 21853725
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATTCCATT
Flanking Amino Acid:
PFKYADEQAKSHQDDRWSDD
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.9
0.72
0.8
78.7
34.1
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
47
-0.1
2.1
71.33
40.1

Associated Gene:

Gene:
DISP1
Ensembl Gene ID:
ENSAPLG00000007189
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037964
21785500 - 21864484
78985
ENSAPLT00000031393
21775185 - 21864484
89300
ENSAPLT00000048153
21793253 - 21864484
71232
ENSAPLT00000018540
21775157 - 21864484
89328
ENSAPLT00000047105
21779171 - 21864484
85314
ENSAPLT00000007463
21785500 - 21864484
78985
ENSAPLT00000038467
21790772 - 21864484
73713