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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21899214_21902396_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21899214 - 21902396
Intron Length:
3183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTCTTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTTCTTTCATA
Flanking Amino Acid:
RTGSTTTSTLRFMMLHQQLV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.9
0.79
0.8
80.6
30.4
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
60.3
0.32
1.7
68.85
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001279
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001265
21896630 - 21914062
17433