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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21925400_21926555_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21925400 - 21926555
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
STSPRIDITDEIPLMEEDP*
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.8
0.74
0.7
75.4
34.7
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
SUSD4
Ensembl Gene ID:
ENSAPLG00000007276
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046566
21925016 - 21996028
71013