Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21943320_21946346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21943320 - 21946346

Intron Length:

3027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTAGTAC

5'SS Class:

major

3'SS Sequence:

TCTTAATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

CTCTTCTTAATT

Flanking Amino Acid:

GTWDNLPICQGCLRPLVLPH

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.4

0.25

1.2

57.2

36.3

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

83.4

0.75

0.8

77.4

35.5

Minor 5ss

38.8

-1.3

3.1

46.7

Minor BPS

76.3

0.9

1.2

82.74

39.5

Associated Gene:

Gene:

SUSD4

Ensembl Gene ID:

ENSAPLG00000007276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046566

21925016 - 21996028

71013

ENSAPLT00000007544

21926427 - 21996028

69602