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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22037937_22038376_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22037937 - 22038376
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GCTTTTATAAAA
Flanking Amino Acid:
SGVVQLSLAENTNISQETAG
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
80.9
28.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.8
0.8
0.7
80.2
25
Minor 5ss
34.9
-1.7
3.4
46.2
49.1
Minor BPS
50
-0
1.7
61.65
38.4

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443