About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22040145_22041179_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22040145 - 22041179
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
TCCTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TATTTCCAAATT
Flanking Amino Acid:
TLWMKIQKYLAIYKKVDSDY
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
66.6
35.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
78.1
0.63
0.8
72.5
32.3
Minor 5ss
42.9
-0.8
3
52.8
46.3
Minor BPS
54.1
0.21
2
77.29
39.5

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758
ENSAPLT00000007897
22037270 - 22066064
28795