About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22042431_22042862_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22042431 - 22042862
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CTGTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TATTTCTGACTT
Flanking Amino Acid:
QTILNRVLAKRKDIKSDGFN
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80
0.67
0.9
75.6
38.3
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
58.6
0.35
1.7
77.52
39.1

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758
ENSAPLT00000007897
22037270 - 22066064
28795