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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22045430_22047144_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22045430 - 22047144
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGGTTTCTAACA
Flanking Amino Acid:
GYSLYQIPQELENSTDIHLN
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.6
0.49
0.9
65
36.2
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
58
0.25
1.7
68.12
38.4

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758
ENSAPLT00000007897
22037270 - 22066064
28795