About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22047157_22049208_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22047157 - 22049208
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTAACATCAACT
Flanking Amino Acid:
LLSIGYSLYQIPQELENSTD
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
86.7
0.83
0.7
84.4
23.5
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
58.7
0.35
1.9
79.97
41

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758
ENSAPLT00000007897
22037270 - 22066064
28795