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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22050273_22051284_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22050273 - 22051284
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TAACCCTGATCT
Flanking Amino Acid:
LDKQIDDGEFWMAFSDFQRQ
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
76.8
31.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
73.9
0.54
1
67
43.8
Minor 5ss
32.7
-2
3
40.8
39.5
Minor BPS
55.3
0.25
1.8
73.28
42.5

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007897
22037270 - 22066064
28795
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758