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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22054572_22054733_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22054572 - 22054733
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
ATTTCCCCACAC
Flanking Amino Acid:
WSALLEKAYAKLNGSYEALT
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
56.8
43
Major BPS
66.4
0.41
1
61.3
37
Major PPT
75
0.56
0.8
69.5
30.1
Minor 5ss
43.9
-0.7
3.1
54.8
44.1
Minor BPS
45.5
-0.3
2.1
63.53
41.4

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007897
22037270 - 22066064
28795
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758