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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22063773_22065827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22063773 - 22065827
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATACTTTGAAAA
Flanking Amino Acid:
TQGIIWKRPTELCSNPQFIV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
70.2
40.5
Major BPS
74.8
0.62
1
67
39.8
Major PPT
84
0.77
0.8
81
36.6
Minor 5ss
34.5
-1.8
3.5
48.2
47.3
Minor BPS
48.8
-0
1.4
58.24
34.2

Associated Gene:

Gene:
CAPN8
Ensembl Gene ID:
ENSAPLG00000007441
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037895
22037622 - 22066064
28443
ENSAPLT00000028880
22039307 - 22066064
26758
ENSAPLT00000007897
22037270 - 22066064
28795