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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22075465_22075805_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22075465 - 22075805
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGACAT
U12 Branch Point Sequence:
GGGACAGTGACA
Flanking Amino Acid:
DEYAGIFHFQFWQYGEWVDV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
52.4
0.06
1.3
60.7
45.9
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
41.8
-0.6
2.2
49.98
40.7

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016