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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22076346_22078133_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22076346 - 22078133
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTAG
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
GCATGCTGAGTT
Flanking Amino Acid:
KGSLLGCSIDITSAAETEAV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73
34
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
85.8
0.8
0.8
77.4
36.9
Minor 5ss
36.5
-1.5
2.9
44.7
43.5
Minor BPS
44.3
-0.3
2
58.41
44.6

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016