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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22079878_22080259_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22079878 - 22080259
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GTTTGTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTACTAATCT
Flanking Amino Acid:
EVEWTGKWNDNCPNWSGVDP
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80
0.68
0.9
77.2
37.1
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
51.4
0.12
2.1
76.59
45.8

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016