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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22080335_22080516_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22080335 - 22080516
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
TTGCCTCCCACA
Flanking Amino Acid:
LTRRHEDGEFWMAFNDFLRH
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
75
0.56
0.8
69
31.6
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
42.5
-0.6
2.1
57.64
41.8

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016