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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22081332_22082179_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22081332 - 22082179
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGTTCAATACAC
Flanking Amino Acid:
MHTIGFAIYEVPPEFSGQTN
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
81.8
38.5
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
24.8
-2.9
3.6
32.5
42.4
Minor BPS
45.3
-0.3
2.2
63.09
41.5

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016