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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22082192_22083524_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22082192 - 22083524
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTGTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAC
U12 Branch Point Sequence:
GCTTTTTGTAAG
Flanking Amino Acid:
GFAIYEVPPEFSGQTNIHLS
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82
38.1
Major BPS
52.2
0.06
1.1
59
36
Major PPT
68
0.4
1.2
74.8
39.1
Minor 5ss
36.4
-1.5
3
51.7
44.8
Minor BPS
42.5
-0.7
1.8
45.27
41.2

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016