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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22083737_22084362_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22083737 - 22084362
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTCTTTATCT
Flanking Amino Acid:
RVFSEKNADSKVIDDEIEAN
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.6
38.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.8
0.78
0.7
77.8
36.5
Minor 5ss
43.9
-0.7
2.5
54.2
37.2
Minor BPS
75.8
0.89
1.5
90.23
33.7

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016