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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22084400_22085194_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22084400 - 22085194
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
CTTGCCATATTC
Flanking Amino Acid:
DDEIEANFDETEISEDDIEP
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
80.4
0.68
0.7
73
31.9
Minor 5ss
45.6
-0.5
3
67.2
43.9
Minor BPS
48.4
-0.1
2
62.7
43.3

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016