Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22085261_22085516_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22085261 - 22085516

Intron Length:

256

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TTCTGTTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTGAA

U12 Branch Point Sequence:

TTCTGTTCCACA

Flanking Amino Acid:

KKLFGQLAGSDAEISAFELR

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

79.9

34.9

Major BPS

64.3

0.35

1.2

55.4

Major PPT

80.9

0.7

0.8

75.8

32.8

Minor 5ss

38.2

-1.3

52.2

44.4

Minor BPS

45.3

-0.3

2.3

62.68

44.2

Associated Gene:

Gene:

CAPN2

Ensembl Gene ID:

ENSAPLG00000009576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010174

22069528 - 22091543

22016