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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22087497_22088171_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22087497 - 22088171
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACACTCTGAATT
Flanking Amino Acid:
TLWTKIQKYQKIYREIDVDK
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80
0.67
0.9
74
36.8
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
54.2
0.21
1.4
65.33
39.2

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016