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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22089090_22090805_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22089090 - 22090805
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCCTCTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACT
Flanking Amino Acid:
TGTIELNLVTWLCFTVI*
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.5
0.6
0.7
71.9
26.3
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
CAPN2
Ensembl Gene ID:
ENSAPLG00000009576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010174
22069528 - 22091543
22016