About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22095694_22097941_R


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
22095694 - 22097941

Intron Length:
2248

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTATGTTGA

5'SS Class:
major

3'SS Sequence:
TATCATTTTTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTATCATTT

Flanking Amino Acid:
GYTQCSQFLYGVQEKMGIMN

Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.2
0.66
1
68
39.7

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
83.9
0.76
0.8
81
35.9

Minor 5ss
46.1
-0.4
2.5
58
46.6

Minor BPS
49.6
0.05
2
76.97
39.9

Associated Gene:

Gene:
TP53BP2

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22091986 - 22138540
46555

22094355 - 22138540
44186