About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22109225_22111727_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22109225 - 22111727
Intron Length:
2503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCGTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTCCTTATCT
Flanking Amino Acid:
EAQQQMLANKEQRLKFLKQQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.5
0.9
65.5
35.6
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
76
0.9
1.5
88.02
36.7

Associated Gene:

Gene:
TP53BP2
Ensembl Gene ID:
ENSAPLG00000011682
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012250
22094355 - 22138540
44186
ENSAPLT00000019366
22091986 - 22138540
46555