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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22147263_22153189_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22147263 - 22153189
Intron Length:
5927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TACTTAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTTACTTAAAT
Flanking Amino Acid:
SYDETSQLRLVCKRMDLVCQ
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
63.8
36.1
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
69.9
0.45
1
63.2
40.9
Minor 5ss
29.2
-2.4
3.7
38.1
42.4
Minor BPS
78.7
0.98
1.5
94.83
31.3

Associated Gene:

Gene:
FBXO28
Ensembl Gene ID:
ENSAPLG00000012603
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013132
22147050 - 22159354
12305