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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22153300_22154272_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22153300 - 22154272
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCTCACTTAATG
Flanking Amino Acid:
CQKQVKAQLPRRESERRNHS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.6
31.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
74.5
0.55
0.9
65.8
41
Minor 5ss
43.1
-0.8
2.4
55.1
42.2
Minor BPS
63.3
0.28
1.6
65.84
42

Associated Gene:

Gene:
FBXO28
Ensembl Gene ID:
ENSAPLG00000012603
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013132
22147050 - 22159354
12305