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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22154412_22156799_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22154412 - 22156799
Intron Length:
2388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATATTCTTAAAT
Flanking Amino Acid:
SNLCCFIPGKVIDEIYRVLR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
69.5
0.44
1
66.4
44.5
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
74.5
0.85
1.3
84.56
35.2

Associated Gene:

Gene:
FBXO28
Ensembl Gene ID:
ENSAPLG00000012603
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013132
22147050 - 22159354
12305