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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22156996_22158959_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22156996 - 22158959
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
ACTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
VSGRLIGAAPVPGPSAALTT
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
79.1
34.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
77.6
30.4
Minor 5ss
45.6
-0.5
2.9
66.8
44.1
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
FBXO28
Ensembl Gene ID:
ENSAPLG00000012603
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013132
22147050 - 22159354
12305