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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22165869_22166492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22165869 - 22166492
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTCTCCCGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATTTTTAAAT
Flanking Amino Acid:
PHADRRKEILAKHPEIKALM
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
0.9
65.5
30.4
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
64.2
0.52
1.3
73.49
36.8

Associated Gene:

Gene:
DEGS1
Ensembl Gene ID:
ENSAPLG00000012629
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013143
22165787 - 22169444
3658