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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22167236_22169297_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22167236 - 22169297
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATATAAAT
Flanking Amino Acid:
PNIPGKSLPLVKKIAAEYYD
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
45.5
-0.2
1.8
62.56
40.9

Associated Gene:

Gene:
DEGS1
Ensembl Gene ID:
ENSAPLG00000012629
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013143
22165787 - 22169444
3658