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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22178517_22180056_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22178517 - 22180056
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
AATTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTGCCTGAATT
Flanking Amino Acid:
MALCDSKSKKGSPFQCRSPT
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.7
0.44
0.9
59.6
37.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
67.7
0.63
1.5
81.73
39.8

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022348
22178074 - 22210107
32034