Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22180146_22181642_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22180146 - 22181642

Intron Length:

1497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTGAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTTTATCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATCCTAAAAT

Flanking Amino Acid:

IAYSQHCDCYTGADLSALVR

Intron Amino Acid Position:

794

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

77.8

38.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

90.4

0.91

0.7

85.8

27.4

Minor 5ss

33.4

-1.9

2.8

41.6

38.2

Minor BPS

69.5

0.69

1.8

86.4

39.1

Associated Gene:

Gene:

NVL

Ensembl Gene ID:

ENSAPLG00000012723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023482

22174821 - 22210107

35287

ENSAPLT00000022348

22178074 - 22210107

32034

ENSAPLT00000013277

22179028 - 22209409

30382