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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22193254_22194688_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22193254 - 22194688
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCACT
5'SS Class:
major
3'SS Sequence:
TCATTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CATTGTTTCACT
Flanking Amino Acid:
SVKGPELLNMYVGESERAVR
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
69.8
40.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.3
0.64
0.9
77
37
Minor 5ss
48.3
-0.2
2.5
64.1
41.4
Minor BPS
50
0.08
2.2
72.26
45

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382