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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22194752_22195492_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22194752 - 22195492
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTTTTTTGATA
Flanking Amino Acid:
PGCGKTLLAKAVANESGLNF
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
68
0.45
1
57.8
39
Major PPT
81.1
0.7
0.9
79.8
32.3
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
68.3
0.57
1.1
72.69
33.6

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382