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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22195598_22196183_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22195598 - 22196183
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TTTTCTTGTATA
Flanking Amino Acid:
VREELTMAILAPVRNPEQFK
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
59.9
0.31
1.8
75.76
36

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382