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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22196403_22198478_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22196403 - 22198478
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTCTGCTATT
Flanking Amino Acid:
DAKQLHLPSKVELQRLLDLL
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
68.9
0.43
1
66
39.8
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
46.5
-0.2
2.4
75.66
41.6

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382
ENSAPLT00000023482
22174821 - 22210107
35287