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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22198750_22199492_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22198750 - 22199492
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTCCCTTCATC
Flanking Amino Acid:
LGIPDEAAREKILQTLCRKL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80.7
31.7
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
78
0.63
0.8
77.8
29.4
Minor 5ss
46.4
-0.4
3.2
66.5
39
Minor BPS
68.9
0.58
1.7
79.77
35.4

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382