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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22199638_22200076_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22199638 - 22200076
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TGGGCATTAACT
Flanking Amino Acid:
IVAQLLTCMDDLNSLAATAQ
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
73.5
38.6
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
82.5
0.73
0.6
81.5
23.6
Minor 5ss
40.7
-1
2.8
54.4
42.7
Minor BPS
63.4
0.5
1.8
78.01
43.9

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382