About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22200195_22202177_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22200195 - 22202177
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGACAC
5'SS Class:
major
3'SS Sequence:
TTCTTGTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATTGTTAATA
Flanking Amino Acid:
KLRELFEQAVSNAPCVLFLD
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.9
36.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.1
0.66
0.8
72.7
37.5
Minor 5ss
27
-2.6
2.9
30.6
36.6
Minor BPS
57.5
0.23
2
68.8
37.7

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382
ENSAPLT00000023482
22174821 - 22210107
35287