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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22207559_22207643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22207559 - 22207643
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTCTG
5'SS Class:
major
3'SS Sequence:
ACTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATGCTTGAACT
Flanking Amino Acid:
RNAFRIQVEKVFEIISNEKE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
65.5
45.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.1
0.83
0.7
85.2
28.9
Minor 5ss
36.5
-1.5
3.3
49.6
46.6
Minor BPS
62.8
0.48
1.5
76.52
39.8

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382