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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22207697_22208826_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22207697 - 22208826
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
TAACCTGCTACT
Flanking Amino Acid:
ILASDLQKTYSADYGRRKRN
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
86.9
0.83
0.8
84.6
36
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
40.7
-0.6
2.3
59.68
43.5

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034
ENSAPLT00000013277
22179028 - 22209409
30382