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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22208901_22209349_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22208901 - 22209349
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTTCTTAACA
Flanking Amino Acid:
DPRLKQRVKQYLASSRCGQY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
78.8
0.9
1.1
79.59
36.6

Associated Gene:

Gene:
NVL
Ensembl Gene ID:
ENSAPLG00000012723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013277
22179028 - 22209409
30382
ENSAPLT00000023482
22174821 - 22210107
35287
ENSAPLT00000022348
22178074 - 22210107
32034