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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22210823_22211851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22210823 - 22211851
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGAT
5'SS Class:
major
3'SS Sequence:
TCCCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCCTTATAA
Flanking Amino Acid:
ARSCCSKLNKWVIPEVIGHA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
77.5
30.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.4
0.84
0.7
82.5
26.3
Minor 5ss
35.4
-1.7
3.4
48.7
41.9
Minor BPS
67.8
0.55
1.7
77.93
38.3

Associated Gene:

Gene:
CNIH4
Ensembl Gene ID:
ENSAPLG00000012950
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013479
22209565 - 22216586
7022