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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22211965_22215855_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22211965 - 22215855
Intron Length:
3891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTAAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAAAC
Flanking Amino Acid:
NLPIATWNIYRFIMVPSGNM
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
75.4
0.57
0.9
70.5
39.8
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
87.4
1.15
1.1
92.09
26.1

Associated Gene:

Gene:
CNIH4
Ensembl Gene ID:
ENSAPLG00000012950
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013479
22209565 - 22216586
7022