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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22215997_22216558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22215997 - 22216558
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TGTTTTGTCACA
Flanking Amino Acid:
HLLCFFMYLYSMILALIND*
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
80.9
0.7
0.9
75.8
38.1
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
47.3
-0.2
2.3
66.82
40.3

Associated Gene:

Gene:
CNIH4
Ensembl Gene ID:
ENSAPLG00000012950
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013479
22209565 - 22216586
7022