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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22225366_22226753_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22225366 - 22226753
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AAGGTGTGATTT
Flanking Amino Acid:
APFVDNQDIEEECSSMDS*
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
85.2
0.79
0.9
84.6
36
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
36.7
-0.9
2.1
47.29
39.5

Associated Gene:

Gene:
WDR26
Ensembl Gene ID:
ENSAPLG00000013139
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022512
22225340 - 22253388
28049
ENSAPLT00000013703
22225340 - 22253578
28239